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SBF2 SET binding factor 2 [ Lagenorhynchus obliquidens (Pacific white-sided dolphin) ]

Gene ID: 113625014, updated on 15-Mar-2024

Summary

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Gene symbol
SBF2
Gene description
SET binding factor 2
See related
EnsemblRapid:ENSLOBG00000002043
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagenorhynchus obliquidens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus
Orthologs
human mouse all
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Genomic context

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See SBF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
100 current ASM367639v1 (GCF_003676395.1) Unplaced Scaffold NW_020837958.1 (34945974..35405541)

NW_020837958.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA57 Neighboring gene adrenomedullin Neighboring gene solute carrier family 35 member E1 pseudogene Neighboring gene uncharacterized LOC113625015 Neighboring gene switching B cell complex subunit SWAP70

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020837958 Unplaced Scaffold Reference ASM367639v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
myotubularin-related protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagenorhynchus obliquidens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM367639v1 Primary Assembly

Genomic

  1. NW_020837958.1 Reference ASM367639v1 Primary Assembly

    Range
    34945974..35405541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027115413.1 → XP_026971214.1  myotubularin-related protein 13 isoform X2

    Related
    ENSLOBP00000002474.1, ENSLOBT00000002817.1
    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1742 → 1847
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam06602
    Location:1116 → 1520
    Myotub-related; Myotubularin-like phosphatase domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain

  2. XM_027115415.1 → XP_026971216.1  myotubularin-related protein 13 isoform X4

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1689 → 1794
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
    cl21483
    Location:1116 → 1513
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

  3. XM_027115412.1 → XP_026971213.1  myotubularin-related protein 13 isoform X1

    Conserved Domains (7) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1774 → 1879
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam06602
    Location:1116 → 1552
    Myotub-related; Myotubularin-like phosphatase domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain

  4. XM_027115414.1 → XP_026971215.1  myotubularin-related protein 13 isoform X3

    Conserved Domains (7) summary
    smart00801
    Location:314 → 382
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    cd01235
    Location:1736 → 1841
    PH_Sbf1_hMTMR5; Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain
    pfam02141
    Location:116 → 295
    DENN; DENN (AEX-3) domain
    pfam06602
    Location:1078 → 1514
    Myotub-related; Myotubularin-like phosphatase domain
    pfam12335
    Location:493 → 716
    SBF2; Myotubularin protein
    cl17171
    Location:844 → 962
    PH-like; Pleckstrin homology-like domain

  5. XM_027115416.1 → XP_026971217.1  myotubularin-related protein 13 isoform X5

    Conserved Domains (6) summary
    smart00801
    Location:352 → 420
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:1 → 86
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    pfam02141
    Location:116 → 298
    DENN; DENN (AEX-3) domain
    pfam12335
    Location:531 → 754
    SBF2; Myotubularin protein
    cl17171
    Location:882 → 1000
    PH-like; Pleckstrin homology-like domain
    cl21483
    Location:1116 → 1513
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

RNA

  1. XR_003434541.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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