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SMARCA2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 [ Lagenorhynchus obliquidens (Pacific white-sided dolphin) ]

Gene ID: 113620086, updated on 20-Sep-2024

Summary

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Gene symbol
SMARCA2
Gene description
SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2
See related
EnsemblRapid:ENSLOBG00000004695
Gene type
protein coding
RefSeq status
MODEL
Organism
Lagenorhynchus obliquidens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Lagenorhynchus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
100 current ASM367639v1 (GCF_003676395.1) Unplaced Scaffold NW_020837951.1 (52366768..52539663)

NW_020837951.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor IIA subunit 2 pseudogene Neighboring gene importin subunit alpha-1 pseudogene Neighboring gene uncharacterized LOC113620089 Neighboring gene uncharacterized LOC113620088 Neighboring gene very low density lipoprotein receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020837951 Unplaced Scaffold Reference ASM367639v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RSC-type complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable global transcription activator SNF2L2
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lagenorhynchus obliquidens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM367639v1 Primary Assembly

Genomic

  1. NW_020837951.1 Reference ASM367639v1 Primary Assembly

    Range
    52366768..52539663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027105759.1 → XP_026961560.1  probable global transcription activator SNF2L2 isoform X1

    Conserved Domains (9) summary
    cd05516
    Location:1367 → 1491
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:421 → 493
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:705 → 1187
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:66 → 367
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:686 → 936
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:575 → 617
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1245 → 1311
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl02556
    Location:1318 → 1404
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  2. XM_027105760.1 → XP_026961561.1  probable global transcription activator SNF2L2 isoform X1

    Conserved Domains (9) summary
    cd05516
    Location:1367 → 1491
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:421 → 493
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:705 → 1187
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:66 → 367
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:686 → 936
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:575 → 617
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1245 → 1311
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl02556
    Location:1318 → 1404
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  3. XM_027105758.1 → XP_026961559.1  probable global transcription activator SNF2L2 isoform X1

    Conserved Domains (9) summary
    cd05516
    Location:1367 → 1491
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:421 → 493
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:705 → 1187
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:66 → 367
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:686 → 936
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:575 → 617
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1245 → 1311
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl02556
    Location:1318 → 1404
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  4. XM_027105762.1 → XP_026961563.1  probable global transcription activator SNF2L2 isoform X3

    Conserved Domains (9) summary
    cd05516
    Location:1288 → 1412
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:342 → 414
    HSA; domain in helicases and associated with SANT domains
    PLN03142
    Location:626 → 1108
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03378
    Location:3 → 288
    PHA03378; EBNA-3B; Provisional
    cd18063
    Location:607 → 857
    DEXHc_SMARCA2; DEXH-box helicase domain of SMARCA2
    pfam07533
    Location:496 → 538
    BRK; BRK domain
    pfam08880
    Location:94 → 128
    QLQ
    pfam14619
    Location:1166 → 1232
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl02556
    Location:1239 → 1325
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  5. XM_027105761.1 → XP_026961562.1  probable global transcription activator SNF2L2 isoform X2

    Related
    ENSLOBP00000006258.1, ENSLOBT00000006932.1
    Conserved Domains (8) summary
    cd05516
    Location:1367 → 1473
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00573
    Location:421 → 493
    HSA; domain in helicases and associated with SANT domains
    pfam07533
    Location:575 → 615
    BRK; BRK domain
    pfam08880
    Location:173 → 207
    QLQ
    pfam14619
    Location:1244 → 1311
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl02556
    Location:1318 → 1380
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    cl26464
    Location:48 → 435
    Atrophin-1; Atrophin-1 family
    cl26465
    Location:705 → 1187
    SNF2_N; SNF2 family N-terminal domain

  6. XM_027105763.1 → XP_026961564.1  probable global transcription activator SNF2L2 isoform X4

    Related
    ENSLOBP00000006312.1, ENSLOBT00000006990.1
    Conserved Domains (2) summary
    cd05516
    Location:86 → 192
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    cl02556
    Location:37 → 99
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Nucleotide Protein
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