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LOC113577349 nuclear factor 1 B-type [ Electrophorus electricus (electric eel) ]

Gene ID: 113577349, updated on 18-Jun-2024

Summary

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Gene symbol
LOC113577349
Gene description
nuclear factor 1 B-type
See related
Ensembl:ENSEEEG00000018612
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Also known as
nfib
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Genomic context

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Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 19 NC_049553.1 (4246522..4329478, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826084.1 (492372..570585)

Chromosome 19 - NC_049553.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 2B catalytic subunit Neighboring gene B-cell scaffold protein with ankyrin repeats Neighboring gene uncharacterized LOC118240142 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene zinc finger protein interacting with ribonucleoprotein K-like Neighboring gene zinc finger DHHC-type palmitoyltransferase 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 B-type
Names
nuclear factor I B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049553.1 Reference fEleEle1.pri

    Range
    4246522..4329478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027009947.2 → XP_026865748.2  nuclear factor 1 B-type isoform X4

    UniProtKB/TrEMBL
    A0A4W4GNV7
    Conserved Domains (3) summary
    pfam10524
    Location:33 → 69
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:231 → 512
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:91 → 195
    MH1; N-terminal Mad Homology 1 (MH1) domain

  2. XM_027009944.2 → XP_026865745.2  nuclear factor 1 B-type isoform X1

    UniProtKB/TrEMBL
    A0A4W4GNV7
    Conserved Domains (3) summary
    pfam10524
    Location:33 → 69
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:231 → 508
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:91 → 195
    MH1; N-terminal Mad Homology 1 (MH1) domain

  3. XM_027009946.2 → XP_026865747.2  nuclear factor 1 B-type isoform X3

    UniProtKB/TrEMBL
    A0A4W4GNV7
    Conserved Domains (3) summary
    pfam10524
    Location:3 → 43
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:205 → 482
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:65 → 169
    MH1; N-terminal Mad Homology 1 (MH1) domain

  4. XM_027009945.2 → XP_026865746.2  nuclear factor 1 B-type isoform X2

    UniProtKB/TrEMBL
    A0A4W4GNV7, A0A4W4GS19
    Related
    ENSEEEP00000039256.2, ENSEEET00000039707.2
    Conserved Domains (3) summary
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:208 → 485
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:68 → 172
    MH1; N-terminal Mad Homology 1 (MH1) domain
Nucleotide Protein
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