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pdlim1 PDZ and LIM domain 1 (elfin) [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113545477, updated on 15-Mar-2024

Summary

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Gene symbol
pdlim1
Gene description
PDZ and LIM domain 1 (elfin)
Locus tag
PHYPO_G00178170
See related
EnsemblRapid:ENSPHYG00025012067
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 3 NC_069712.1 (13876286..13881491, complement)

Chromosome 3 - NC_069712.1Genomic Context describing neighboring genes Neighboring gene pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha Neighboring gene sphingosine-1-phosphate lyase 1 Neighboring gene v-rel avian reticuloendotheliosis viral oncogene homolog Neighboring gene poly(A) polymerase gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069712.1 Chromosome 3 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ and LIM domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069712.1 Reference fPanHyp1.pri

    Range
    13876286..13881491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026944855.3 → XP_026800656.1  PDZ and LIM domain protein 1

    UniProtKB/TrEMBL
    A0A5N5PRY0
    Related
    ENSPHYP00025027802.1, ENSPHYT00025029934.1
    Conserved Domains (3) summary
    cd09448
    Location:252 → 303
    LIM_CLP36; This family represents the LIM domain of CLP36
    cd00992
    Location:3 → 80
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:132 → 226
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein
Heading Accession and Version

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