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chd1 chromodomain helicase DNA binding protein 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113543542, updated on 15-Mar-2024

Summary

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Gene symbol
chd1
Gene description
chromodomain helicase DNA binding protein 1
Locus tag
PHYPO_G00081610
See related
EnsemblRapid:ENSPHYG00025016390
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 17 NC_069726.1 (16784808..16802346, complement)

Chromosome 17 - NC_069726.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113543669 Neighboring gene uncharacterized LOC113543670 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA arginine (anticodon CCU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069726.1 Chromosome 17 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069726.1 Reference fPanHyp1.pri

    Range
    16784808..16802346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026941841.3 → XP_026797642.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    Related
    ENSPHYP00025040197.1, ENSPHYT00025042987.1
    Conserved Domains (5) summary
    cd00024
    Location:288 → 347
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:386 → 438
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1502 → 1592
    DUF4208; Domain of unknown function (DUF4208)
    cl25887
    Location:1641 → 1781
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl26465
    Location:464 → 994
    SNF2_N; SNF2 family N-terminal domain

  2. XM_026941840.3 → XP_026797641.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5N5LNG4
    Related
    ENSPHYP00025040190.1, ENSPHYT00025042980.1
    Conserved Domains (6) summary
    PLN03142
    Location:464 → 995
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1642 → 1782
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:382 → 438
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:265 → 347
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1504 → 1593
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1119 → 1206
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
Nucleotide Protein
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