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irx6a iroquois homeobox 6a [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113540954, updated on 15-Mar-2024

Summary

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Gene symbol
irx6a
Gene description
iroquois homeobox 6a
Locus tag
PHYPO_G00145150
See related
EnsemblRapid:ENSPHYG00025004894
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Also known as
irx6
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 25
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 25 NC_069734.1 (5266454..5272441)

Chromosome 25 - NC_069734.1Genomic Context describing neighboring genes Neighboring gene iroquois homeobox 3a Neighboring gene uncharacterized LOC128317479 Neighboring gene iroquois homeobox 5a Neighboring gene matrix metallopeptidase 2 Neighboring gene lysophosphatidylcholine acyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069734.1 Chromosome 25 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iroquois-class homeodomain protein IRX-6a
Names
iroquois homeobox 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069734.1 Reference fPanHyp1.pri

    Range
    5266454..5272441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026937657.3 → XP_026793458.1  iroquois-class homeodomain protein IRX-6a isoform X1

    UniProtKB/TrEMBL
    A0A5N5K387
    Conserved Domains (1) summary
    pfam05920
    Location:174 → 213
    Homeobox_KN; Homeobox KN domain

  2. XM_026937658.3 → XP_026793459.1  iroquois-class homeodomain protein IRX-6a isoform X2

    Related
    ENSPHYP00025009837.1, ENSPHYT00025011134.1
    Conserved Domains (1) summary
    pfam05920
    Location:174 → 213
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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