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snrpd1 small nuclear ribonucleoprotein D1 polypeptide [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113535923, updated on 15-Mar-2024

Summary

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Gene symbol
snrpd1
Gene description
small nuclear ribonucleoprotein D1 polypeptide
Locus tag
PHYPO_G00132830
See related
EnsemblRapid:ENSPHYG00025010549
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 23 NC_069732.1 (6668576..6672013, complement)

Chromosome 23 - NC_069732.1Genomic Context describing neighboring genes Neighboring gene zinc and ring finger 2a Neighboring gene gamma-glutamylcyclotransferase a Neighboring gene CLPTM1 like Neighboring gene ribosomal protein lateral stalk subunit P1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069732.1 Chromosome 23 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SMN-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein Sm D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069732.1 Reference fPanHyp1.pri

    Range
    6668576..6672013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026929506.3 → XP_026785307.1  small nuclear ribonucleoprotein Sm D1

    UniProtKB/TrEMBL
    A0A5N5KKH8
    Related
    ENSPHYP00025023510.1, ENSPHYT00025025576.1
    Conserved Domains (1) summary
    cd01724
    Location:2 → 93
    Sm_D1; Sm protein D1
Nucleotide Protein
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