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znf423 zinc finger protein 423 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113534395, updated on 15-Mar-2024

Summary

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Gene symbol
znf423
Gene description
zinc finger protein 423
Locus tag
PHYPO_G00214140
See related
EnsemblRapid:ENSPHYG00025016824
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See znf423 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 6 NC_069715.1 (13078342..13227424, complement)

Chromosome 6 - NC_069715.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113534523 Neighboring gene uncharacterized LOC113534524 Neighboring gene cerebellin 1 precursor Neighboring gene uncharacterized LOC128318500

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069715.1 Chromosome 6 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 423

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069715.1 Reference fPanHyp1.pri

    Range
    13078342..13227424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026927149.3 → XP_026782950.1  zinc finger protein 423 isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:149 → 254
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:727 → 816
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:150 → 170
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_026927148.3 → XP_026782949.1  zinc finger protein 423 isoform X1

    Related
    ENSPHYP00025040282.1, ENSPHYT00025043072.1
    Conserved Domains (3) summary
    COG5048
    Location:150 → 255
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:728 → 817
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:151 → 171
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_026927150.3 → XP_026782951.1  zinc finger protein 423 isoform X3

    UniProtKB/TrEMBL
    A0A5N5P790
    Related
    ENSPHYP00025040292.1, ENSPHYT00025043082.1
    Conserved Domains (3) summary
    COG5048
    Location:150 → 255
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:728 → 817
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:151 → 171
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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