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wdhd1 WD repeat and HMG-box DNA binding protein 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113533741, updated on 6-Jun-2024

Summary

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Gene symbol
wdhd1
Gene description
WD repeat and HMG-box DNA binding protein 1
Locus tag
PHYPO_G00019580
See related
EnsemblRapid:ENSPHYG00025027981
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 10 NC_069719.1 (25651429..25676789, complement)

Chromosome 10 - NC_069719.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 4A Neighboring gene GTP cyclohydrolase 1 Neighboring gene suppressor of cytokine signaling 4 Neighboring gene glucosamine-phosphate N-acetyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069719.1 Chromosome 10 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat and HMG-box DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069719.1 Reference fPanHyp1.pri

    Range
    25651429..25676789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026926034.3 → XP_026781835.3  WD repeat and HMG-box DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5N5N575
    Related
    ENSPHYP00025059449.1, ENSPHYT00025067960.1

  2. XM_026926036.3 → XP_026781837.3  WD repeat and HMG-box DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5N5N575
    Related
    ENSPHYP00025059453.1, ENSPHYT00025067966.1
Nucleotide Protein
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