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cbx5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113530731, updated on 12-Sep-2024

Summary

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Gene symbol
cbx5
Gene description
chromobox homolog 5 (HP1 alpha homolog, Drosophila)
Locus tag
PHYPO_G00073860
See related
EnsemblRapid:ENSPHYG00025003827
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 16 NC_069725.1 (20627521..20637638, complement)

Chromosome 16 - NC_069725.1Genomic Context describing neighboring genes Neighboring gene homeobox C10a Neighboring gene homeobox C3a Neighboring gene homeobox C1a Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene nuclear factor, erythroid 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069725.1 Chromosome 16 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromobox protein homolog 5
Names
chromobox 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069725.1 Reference fPanHyp1.pri

    Range
    20627521..20637638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026920991.3 → XP_026776792.1  chromobox protein homolog 5

    UniProtKB/TrEMBL
    A0A5N5LWQ9
    Conserved Domains (2) summary
    cd18651
    Location:20 → 69
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cl28914
    Location:128 → 185
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  2. XM_026920990.3 → XP_026776791.1  chromobox protein homolog 5

    UniProtKB/TrEMBL
    A0A5N5LWQ9
    Related
    ENSPHYP00025007477.1, ENSPHYT00025008549.1
    Conserved Domains (2) summary
    cd18651
    Location:20 → 69
    CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
    cl28914
    Location:128 → 185
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
Nucleotide Protein
Heading Accession and Version

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