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ccnt1 cyclin T1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113530477, updated on 6-Jun-2024

Summary

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Gene symbol
ccnt1
Gene description
cyclin T1
Locus tag
PHYPO_G00073650
See related
EnsemblRapid:ENSPHYG00025003859
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 16 NC_069725.1 (20246473..20254394)

Chromosome 16 - NC_069725.1Genomic Context describing neighboring genes Neighboring gene NCK-associated protein 5-like Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene mutL homolog 3 (E. coli) Neighboring gene premelanosome protein b Neighboring gene tubulin, alpha 1c

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069725.1 Chromosome 16 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription, elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin/CDK positive transcription elongation factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-T1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069725.1 Reference fPanHyp1.pri

    Range
    20246473..20254394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053240957.1 → XP_053096932.1  cyclin-T1 isoform X1

    UniProtKB/TrEMBL
    A0A5N5LV57

  2. XM_026920527.3 → XP_026776328.3  cyclin-T1 isoform X2

    UniProtKB/TrEMBL
    A0A5N5LV57
    Related
    ENSPHYP00025007561.1, ENSPHYT00025008633.1
Nucleotide Protein
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