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arrdc2 arrestin domain containing 2 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113529890, updated on 12-Sep-2024

Summary

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Gene symbol
arrdc2
Gene description
arrestin domain containing 2
Locus tag
PHYPO_G00027920
See related
EnsemblRapid:ENSPHYG00025004310
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 11 NC_069720.1 (20785307..20792860, complement)

Chromosome 11 - NC_069720.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117598420 Neighboring gene secreted immunoglobulin domain 1 Neighboring gene uncharacterized si:dkey-13m1.5 Neighboring gene homer scaffold protein 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069720.1 Chromosome 11 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arrestin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069720.1 Reference fPanHyp1.pri

    Range
    20785307..20792860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026919482.3 → XP_026775283.1  arrestin domain-containing protein 2 isoform X2

    Related
    ENSPHYP00025008506.1, ENSPHYT00025009724.1
    Conserved Domains (2) summary
    smart01017
    Location:179 → 304
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain
    pfam00339
    Location:9 → 155
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain

  2. XM_034308715.2 → XP_034164606.1  arrestin domain-containing protein 2 isoform X2

    Related
    ENSPHYP00025008501.1, ENSPHYT00025009719.1
    Conserved Domains (2) summary
    smart01017
    Location:179 → 304
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain
    pfam00339
    Location:9 → 155
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain

  3. XM_026919474.3 → XP_026775275.1  arrestin domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A5N5MW25
    Related
    ENSPHYP00025008496.1, ENSPHYT00025009713.1
    Conserved Domains (2) summary
    smart01017
    Location:183 → 308
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain
    pfam00339
    Location:9 → 159
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain
Nucleotide Protein
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