U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

upf2 UPF2 regulator of nonsense mediated mRNA decay [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113529658, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
upf2
Gene description
UPF2 regulator of nonsense mediated mRNA decay
Locus tag
PHYPO_G00247510
See related
EnsemblRapid:ENSPHYG00025007981
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See upf2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 9 NC_069718.1 (25532089..25557403, complement)

Chromosome 9 - NC_069718.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113530165 Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene protein FAM180A Neighboring gene myotrophin

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_069718.1 Chromosome 9 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
regulator of nonsense transcripts 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069718.1 Reference fPanHyp1.pri

    Range
    25532089..25557403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026919018.3 → XP_026774819.1  regulator of nonsense transcripts 2

    UniProtKB/TrEMBL
    A0A5N5NE97
    Related
    ENSPHYP00025018006.1, ENSPHYT00025019424.1
    Conserved Domains (2) summary
    smart00543
    Location:776 → 989
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam04050
    Location:1101 → 1224
    Upf2; Up-frameshift suppressor 2

  2. XM_026919016.3 → XP_026774817.1  regulator of nonsense transcripts 2

    UniProtKB/TrEMBL
    A0A5N5NE97
    Conserved Domains (2) summary
    smart00543
    Location:776 → 989
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam04050
    Location:1101 → 1224
    Upf2; Up-frameshift suppressor 2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.