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rbmx RNA binding motif protein X-linked [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113529278, updated on 15-Mar-2024

Summary

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Gene symbol
rbmx
Gene description
RNA binding motif protein X-linked
Locus tag
PHYPO_G00222920
See related
EnsemblRapid:ENSPHYG00025002598
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See rbmx in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 7 NC_069716.1 (16648071..16653512)

Chromosome 7 - NC_069716.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 101 Neighboring gene transmembrane 9 superfamily protein member 5 Neighboring gene small nucleolar RNA SNORD61 Neighboring gene small nucleolar RNA SNORD61 Neighboring gene small nucleolar RNA SNORD61 Neighboring gene Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 Neighboring gene CD40 ligand

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069716.1 Chromosome 7 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding motif protein, X chromosome

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069716.1 Reference fPanHyp1.pri

    Range
    16648071..16653512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034306141.2 → XP_034162032.1  RNA-binding motif protein, X chromosome

    UniProtKB/TrEMBL
    A0A5N5NV18
    Related
    ENSPHYP00025004603.1, ENSPHYT00025005506.1
    Conserved Domains (3) summary
    TIGR01628
    Location:10 → 190
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PHA03307
    Location:152 → 376
    PHA03307; transcriptional regulator ICP4; Provisional
    cd12382
    Location:7 → 86
    RRM_RBMX_like; RNA recognition motif (RRM) found in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins

RNA

  1. XR_004578473.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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