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wipi1 WD repeat domain, phosphoinositide interacting 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113528013, updated on 12-Sep-2024

Summary

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Gene symbol
wipi1
Gene description
WD repeat domain, phosphoinositide interacting 1
Locus tag
PHYPO_G00041120
See related
EnsemblRapid:ENSPHYG00025018004
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 13 NC_069722.1 (3720663..3740154)

Chromosome 13 - NC_069722.1Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) a Neighboring gene uncharacterized LOC113528014 Neighboring gene solute carrier family 16 member 6b Neighboring gene apoptosis regulator BAX-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069722.1 Chromosome 13 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat domain phosphoinositide-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069722.1 Reference fPanHyp1.pri

    Range
    3720663..3740154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026916237.3 → XP_026772038.1  WD repeat domain phosphoinositide-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5N5MF27
    Related
    ENSPHYP00025043452.1, ENSPHYT00025046423.1
    Conserved Domains (2) summary
    sd00039
    Location:144 → 182
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:118 → 260
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_034309825.2 → XP_034165716.1  WD repeat domain phosphoinositide-interacting protein 1 isoform X2

    Conserved Domains (2) summary
    sd00039
    Location:143 → 181
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:117 → 259
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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