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Nr1h4 nuclear receptor subfamily 1 group H member 4 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113189024, updated on 15-Mar-2024

Summary

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Gene symbol
Nr1h4
Gene description
nuclear receptor subfamily 1 group H member 4
See related
Ensembl:ENSUPAG00010003387
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539894.1 (6746809..6796709, complement)

NW_020539894.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene growth arrest specific 2 like 3 Neighboring gene solute carrier family 17 member 8 Neighboring gene succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial pseudogene Neighboring gene SCY1 like pseudokinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020539894 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables bile acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bile acid receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020539894.1 Reference ASM342692v1

    Range
    6746809..6796709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026397639.1 → XP_026253424.1  bile acid receptor isoform X2

    UniProtKB/TrEMBL
    A0A8D2GYA8
    Conserved Domains (2) summary
    cd06936
    Location:257 → 477
    NR_LBD_Fxr; The ligand binding domain of Farnesoid X receptor:a member of the nuclear receptor superfamily of ligand-activated transcription factors
    cd06962
    Location:134 → 217
    NR_DBD_FXR; DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers

  2. XM_026397637.1 → XP_026253422.1  bile acid receptor isoform X1

    UniProtKB/TrEMBL
    A0A8D2GQD8, A0A8D2GYA8
    Related
    ENSUPAP00010004187.1, ENSUPAT00010004820.1
    Conserved Domains (2) summary
    cd06936
    Location:261 → 481
    NR_LBD_Fxr; The ligand binding domain of Farnesoid X receptor:a member of the nuclear receptor superfamily of ligand-activated transcription factors
    cd06962
    Location:134 → 221
    NR_DBD_FXR; DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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