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Ppfia4 PTPRF interacting protein alpha 4 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113188766, updated on 15-Mar-2024

Summary

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Gene symbol
Ppfia4
Gene description
PTPRF interacting protein alpha 4
See related
Ensembl:ENSUPAG00010008098
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540069.1 (1406045..1455706, complement)

NW_020540069.1Genomic Context describing neighboring genes Neighboring gene myosin binding protein H Neighboring gene adenosine A1 receptor Neighboring gene myogenin Neighboring gene transmembrane protein 183A Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540069 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
liprin-alpha-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540069.1 Reference ASM342692v1

    Range
    1406045..1455706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026397249.1 → XP_026253034.1  liprin-alpha-4 isoform X4

    UniProtKB/TrEMBL
    A0A8D2H4U3, A0A8D2HDL2
    Related
    ENSUPAP00010010169.1, ENSUPAT00010011699.1
    Conserved Domains (4) summary
    cd09562
    Location:848 → 918
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:956 → 1021
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1041 → 1112
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    cl25732
    Location:227 → 491
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_026397248.1 → XP_026253033.1  liprin-alpha-4 isoform X3

    UniProtKB/TrEMBL
    A0A8D2H4U3, A0A8D2H7D7
    Related
    ENSUPAP00010010148.1, ENSUPAT00010011676.1
    Conserved Domains (4) summary
    cd09562
    Location:848 → 918
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:965 → 1030
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1050 → 1121
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    cl25732
    Location:227 → 491
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_026397247.1 → XP_026253032.1  liprin-alpha-4 isoform X2

    UniProtKB/TrEMBL
    A0A8D2H4U3
    Conserved Domains (4) summary
    cd09562
    Location:848 → 918
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:967 → 1032
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1052 → 1123
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    cl25732
    Location:227 → 491
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_026397246.1 → XP_026253031.1  liprin-alpha-4 isoform X1

    UniProtKB/TrEMBL
    A0A8D2H4U3
    Conserved Domains (4) summary
    cd09562
    Location:848 → 918
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:976 → 1041
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1061 → 1132
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    cl25732
    Location:227 → 491
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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