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Snrpe small nuclear ribonucleoprotein polypeptide E [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113188717, updated on 15-Mar-2024

Summary

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Gene symbol
Snrpe
Gene description
small nuclear ribonucleoprotein polypeptide E
See related
Ensembl:ENSUPAG00010007135
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020540069.1 (741362..747185, complement)

NW_020540069.1Genomic Context describing neighboring genes Neighboring gene ethanolamine kinase 2 Neighboring gene SRY-box transcription factor 13 Neighboring gene zinc finger CCCH-type containing 11A Neighboring gene zinc finger BED-type containing 6 Neighboring gene lymphocyte transmembrane adaptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020540069 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020540069.1 Reference ASM342692v1

    Range
    741362..747185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026397165.1 → XP_026252950.1  small nuclear ribonucleoprotein E

    UniProtKB/TrEMBL
    A0A8D2H9J1, A0A8D2KF29
    Related
    ENSUPAP00010008865.1, ENSUPAT00010010201.1
    Conserved Domains (1) summary
    cd01718
    Location:11 → 89
    Sm_E; Sm protein E
Nucleotide Protein
Heading Accession and Version

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