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Uchl5 ubiquitin C-terminal hydrolase L5 [ Urocitellus parryii (Arctic ground squirrel) ]

Gene ID: 113184109, updated on 15-Mar-2024

Summary

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Gene symbol
Uchl5
Gene description
ubiquitin C-terminal hydrolase L5
Gene type
protein coding
RefSeq status
MODEL
Organism
Urocitellus parryii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Urocitellus
Orthologs
human mouse all
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Genomic context

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See Uchl5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM342692v1 (GCF_003426925.1) Unplaced Scaffold NW_020539966.1 (4870985..4913512, complement)

NW_020539966.1Genomic Context describing neighboring genes Neighboring gene protein RUFY3-like Neighboring gene regulator of G protein signaling 2 Neighboring gene small nucleolar RNA U109 Neighboring gene Ro60, Y RNA binding protein Neighboring gene glutaredoxin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020539966 Unplaced Scaffold Reference ASM342692v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase isozyme L5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Urocitellus parryii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM342692v1

Genomic

  1. NW_020539966.1 Reference ASM342692v1

    Range
    4870985..4913512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026390700.1 → XP_026246485.1  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X2

    Conserved Domains (1) summary
    cd02255
    Location:8 → 223
    Peptidase_C12; Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1

  2. XM_026390699.1 → XP_026246484.1  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X1

    Conserved Domains (1) summary
    cd02255
    Location:8 → 223
    Peptidase_C12; Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1

  3. XM_026390703.1 → XP_026246488.1  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X5

    Conserved Domains (2) summary
    cd02255
    Location:8 → 223
    Peptidase_C12; Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1
    pfam18031
    Location:235 → 271
    UCH_C; Ubiquitin carboxyl-terminal hydrolases

  4. XM_026390702.1 → XP_026246487.1  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X4

    Conserved Domains (2) summary
    cd02255
    Location:8 → 210
    Peptidase_C12; Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1
    cl25508
    Location:177 → 275
    Spc7; Spc7 kinetochore protein

  5. XM_026390701.1 → XP_026246486.1  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X3

    Conserved Domains (2) summary
    cd02255
    Location:8 → 210
    Peptidase_C12; Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1
    pfam15272
    Location:205 → 241
    BBP1_C; Spindle pole body component BBP1, C-terminal

  6. XM_026390704.1 → XP_026246489.1  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X6

    Conserved Domains (1) summary
    cd02255
    Location:1 → 99
    Peptidase_C12; Cysteine peptidase C12 contains ubiquitin carboxyl-terminal hydrolase (UCH) families L1, L3, L5 and BAP1

RNA

  1. XR_003300948.1 RNA Sequence

  2. XR_003300947.1 RNA Sequence

Nucleotide Protein
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