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spg11 SPG11 vesicle trafficking associated, spatacsin [ Anabas testudineus (climbing perch) ]

Gene ID: 113165290, updated on 15-Mar-2024

Summary

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Gene symbol
spg11
Gene description
SPG11 vesicle trafficking associated, spatacsin
See related
Ensembl:ENSATEG00000027690
Gene type
protein coding
RefSeq status
MODEL
Organism
Anabas testudineus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
40
Annotation release Status Assembly Chr Location
101 current fAnaTes1.2 (GCF_900324465.2) 6 NC_046615.1 (23860997..23879196, complement)
100 previous assembly fAnaTes1.1 (GCF_900324465.1) Unplaced Scaffold NW_020535997.1 (23860997..23879196, complement)

Chromosome 6 - NC_046615.1Genomic Context describing neighboring genes Neighboring gene neuronal acetylcholine receptor subunit alpha-7 Neighboring gene zinc finger protein 277 Neighboring gene cytosolic iron-sulfur assembly component 2A Neighboring gene relaxin family peptide receptor 3.3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axo-dendritic transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spatacsin
Names
SPG11, spatacsin vesicle trafficking associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anabas testudineus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAnaTes1.2 Primary Assembly

Genomic

  1. NC_046615.1 Reference fAnaTes1.2 Primary Assembly

    Range
    23860997..23879196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026364687.1 → XP_026220472.1  spatacsin isoform X3

  2. XM_026364686.1 → XP_026220471.1  spatacsin isoform X2

  3. XM_026364685.1 → XP_026220470.1  spatacsin isoform X1

  4. XM_026364689.1 → XP_026220474.1  spatacsin isoform X5

    Related
    ENSATET00000064326.1

  5. XM_026364688.1 → XP_026220473.1  spatacsin isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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