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rad50 RAD50 homolog, double strand break repair protein [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113143431, updated on 15-Mar-2024

Summary

Gene symbol
rad50
Gene description
RAD50 homolog, double strand break repair protein
See related
Ensembl:ENSMAMG00000021367
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
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Genomic context

See rad50 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
28
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 14 NC_046646.1 (20039616..20058128)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535942.1 (20039616..20058128)

Chromosome 14 - NC_046646.1Genomic Context describing neighboring genes Neighboring gene muscle segment homeobox 2b Neighboring gene dopamine receptor D1b Neighboring gene POU class 4 homeobox 3 Neighboring gene RNA binding motif protein 27

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables G-quadruplex DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in chromosome organization involved in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of Mre11 complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
DNA repair protein RAD50
Names
RAD50 double strand break repair protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046646.1 Reference fMasArm1.2 Primary Assembly

    Range
    20039616..20058128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026329052.1XP_026184837.1  DNA repair protein RAD50

    UniProtKB/TrEMBL
    A0A3Q3N8A8, A0A7N8XAB1
    Related
    ENSMAMP00000031746.1, ENSMAMT00000032577.2
    Conserved Domains (1) summary
    cl25732
    Location:21312
    SMC_N; RecF/RecN/SMC N terminal domain