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nfib nuclear factor I B [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113138855, updated on 14-Dec-2023

Summary

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Gene symbol
nfib
Gene description
nuclear factor I B
See related
Ensembl:ENSMAMG00000006211
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
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Genomic context

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Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 18 NC_046650.1 (15656449..15716385)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535858.1 (15656449..15716385)

Chromosome 18 - NC_046650.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 21 Neighboring gene phospholipase A2-activating protein Neighboring gene B-cell scaffold protein with ankyrin repeats-like Neighboring gene protein phosphatase 3 catalytic subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 B-type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046650.1 Reference fMasArm1.2 Primary Assembly

    Range
    15656449..15716385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026321690.1 → XP_026177475.1  nuclear factor 1 B-type isoform X3

    UniProtKB/TrEMBL
    A0A3Q3RT51
    Conserved Domains (3) summary
    pfam00859
    Location:206 → 487
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:4 → 43
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:65 → 169
    MH1; N-terminal Mad Homology 1 (MH1) domain

  2. XM_033325684.1 → XP_033181575.1  nuclear factor 1 B-type isoform X4

    UniProtKB/TrEMBL
    A0A3Q3LH76, A0A3Q3RT51
    Related
    ENSMAMP00000009181.1, ENSMAMT00000009423.2
    Conserved Domains (3) summary
    pfam10524
    Location:3 → 43
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:206 → 486
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:65 → 169
    MH1; N-terminal Mad Homology 1 (MH1) domain

  3. XM_026321698.1 → XP_026177483.1  nuclear factor 1 B-type isoform X5

    UniProtKB/TrEMBL
    A0A3Q3RT51
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 494
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:68 → 172
    MH1; N-terminal Mad Homology 1 (MH1) domain

  4. XM_026321673.1 → XP_026177458.1  nuclear factor 1 B-type isoform X1

    UniProtKB/TrEMBL
    A0A3Q3RT51
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 490
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:68 → 172
    MH1; N-terminal Mad Homology 1 (MH1) domain

  5. XM_026321707.1 → XP_026177492.1  nuclear factor 1 B-type isoform X6

    UniProtKB/TrEMBL
    A0A3Q3RT51
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 493
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:68 → 172
    MH1; N-terminal Mad Homology 1 (MH1) domain

  6. XM_026321681.1 → XP_026177466.1  nuclear factor 1 B-type isoform X2

    UniProtKB/TrEMBL
    A0A3Q3LH88, A0A3Q3RT51
    Related
    ENSMAMP00000009196.1, ENSMAMT00000009439.2
    Conserved Domains (3) summary
    pfam00859
    Location:209 → 489
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:68 → 172
    MH1; N-terminal Mad Homology 1 (MH1) domain
Nucleotide Protein
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