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kdm6ba lysine (K)-specific demethylase 6B, a [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113136520, updated on 15-Mar-2024

Summary

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Gene symbol
kdm6ba
Gene description
lysine (K)-specific demethylase 6B, a
See related
Ensembl:ENSMAMG00000007596
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Also known as
kdm6b
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
33
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 18 NC_046650.1 (6096188..6181179)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535858.1 (6096189..6181179)

Chromosome 18 - NC_046650.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113125181 Neighboring gene dynein, axonemal, heavy chain 2 Neighboring gene U1 spliceosomal RNA Neighboring gene transmembrane protein 88 b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K27me2/H3K27me3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MLL3/4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 6B
Names
lysine demethylase 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046650.1 Reference fMasArm1.2 Primary Assembly

    Range
    6096188..6181179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033325674.1 → XP_033181565.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  2. XM_033325675.1 → XP_033181566.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  3. XM_033325676.1 → XP_033181567.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  4. XM_033325678.1 → XP_033181569.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  5. XM_033325682.1 → XP_033181573.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  6. XM_033325677.1 → XP_033181568.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  7. XM_033325679.1 → XP_033181570.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  8. XM_033325681.1 → XP_033181572.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Related
    ENSMAMP00000011199.1, ENSMAMT00000011487.2
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  9. XM_033325680.1 → XP_033181571.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase

  10. XM_033325683.1 → XP_033181574.1  lysine-specific demethylase 6B

    UniProtKB/TrEMBL
    A0A3Q3LPC7
    Conserved Domains (2) summary
    smart00558
    Location:1913 → 1977
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    pfam02373
    Location:1947 → 2055
    JmjC; JmjC domain, hydroxylase
Nucleotide Protein
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