U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

capn10 calpain 10 [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113134201, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
capn10
Gene description
calpain 10
See related
Ensembl:ENSMAMG00000010866
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 17 NC_046649.1 (12220139..12226688)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535907.1 (12220139..12226688)

Chromosome 17 - NC_046649.1Genomic Context describing neighboring genes Neighboring gene chemokine (C-C motif) ligand 20a, duplicate 3 Neighboring gene chemokine (C-C motif) ligand 20a, duplicate 4 Neighboring gene eukaryotic translation initiation factor 4E family member 2 Neighboring gene phospholipid scramblase 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-10

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046649.1 Reference fMasArm1.2 Primary Assembly

    Range
    12220139..12226688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026313438.1 → XP_026169223.1  calpain-10

    UniProtKB/TrEMBL
    A0A3Q3M463
    Related
    ENSMAMP00000016034.1, ENSMAMT00000016470.2
    Conserved Domains (3) summary
    smart00720
    Location:342 → 483
    calpain_III; calpain_III domain
    cd00044
    Location:14 → 324
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cl00165
    Location:506 → 642
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.