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crocc ciliary rootlet coiled-coil, rootletin [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113130128, updated on 18-Aug-2023

Summary

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Gene symbol
crocc
Gene description
ciliary rootlet coiled-coil, rootletin
See related
Ensembl:ENSMAMG00000023881
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
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Genomic context

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See crocc in Genome Data Viewer
Location:
chromosome: 5
Exon count:
38
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 5 NC_046637.1 (28407458..28424919, complement)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535886.1 (14326159..14343609)

Chromosome 5 - NC_046637.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase complex, subunit B, iron sulfur (Ip) Neighboring gene microfibril associated protein 2 Neighboring gene NECAP endocytosis associated 2 Neighboring gene SUZ RNA binding domain containing 1 Neighboring gene F-box protein 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rootletin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046637.1 Reference fMasArm1.2 Primary Assembly

    Range
    28407458..28424919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026306471.2 → XP_026162256.1  rootletin isoform X2

    UniProtKB/TrEMBL
    A0A3Q3NN86
    Conserved Domains (3) summary
    pfam15035
    Location:162 → 350
    Rootletin; Ciliary rootlet component, centrosome cohesion
    cl25633
    Location:1776 → 1889
    HlyD; HlyD membrane-fusion protein of T1SS
    cl25732
    Location:1020 → 1813
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_026306470.2 → XP_026162255.1  rootletin isoform X1

    UniProtKB/TrEMBL
    A0A3Q3NN86
    Conserved Domains (2) summary
    pfam15035
    Location:162 → 350
    Rootletin; Ciliary rootlet component, centrosome cohesion
    cl25732
    Location:1020 → 1818
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_026306475.2 → XP_026162260.1  rootletin isoform X5

    UniProtKB/TrEMBL
    A0A3Q3NN86
    Related
    ENSMAMP00000035524.2, ENSMAMT00000036441.2
    Conserved Domains (2) summary
    pfam15035
    Location:86 → 274
    Rootletin; Ciliary rootlet component, centrosome cohesion
    cl25732
    Location:944 → 1742
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_026306474.2 → XP_026162259.1  rootletin isoform X5

    UniProtKB/TrEMBL
    A0A3Q3NN86
    Conserved Domains (2) summary
    pfam15035
    Location:86 → 274
    Rootletin; Ciliary rootlet component, centrosome cohesion
    cl25732
    Location:944 → 1742
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_026306473.2 → XP_026162258.1  rootletin isoform X4

    UniProtKB/TrEMBL
    A0A3Q3NN86
    Related
    ENSMAMP00000065171.1, ENSMAMT00000053843.1
    Conserved Domains (3) summary
    pfam15035
    Location:150 → 338
    Rootletin; Ciliary rootlet component, centrosome cohesion
    cl25633
    Location:1764 → 1877
    HlyD; HlyD membrane-fusion protein of T1SS
    cl25732
    Location:1008 → 1801
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_026306472.2 → XP_026162257.1  rootletin isoform X3

    UniProtKB/TrEMBL
    A0A3Q3NN86
    Conserved Domains (2) summary
    pfam15035
    Location:150 → 338
    Rootletin; Ciliary rootlet component, centrosome cohesion
    cl25732
    Location:1008 → 1806
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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