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gatad2b GATA zinc finger domain containing 2B [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113126523, updated on 15-Mar-2024

Summary

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Gene symbol
gatad2b
Gene description
GATA zinc finger domain containing 2B
See related
Ensembl:ENSMAMG00000000301
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 11 NC_046643.1 (1369684..1434792, complement)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535859.1 (1369684..1434792, complement)

Chromosome 11 - NC_046643.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113126559 Neighboring gene small nucleolar RNA SNORA8 Neighboring gene thioredoxin interacting protein a Neighboring gene immunoglobulin superfamily DCC subclass member 3-like Neighboring gene transmembrane protein 106B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor p66-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046643.1 Reference fMasArm1.2 Primary Assembly

    Range
    1369684..1434792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026300573.1 → XP_026156358.1  transcriptional repressor p66-beta

    UniProtKB/TrEMBL
    A0A3Q3RF69
    Conserved Domains (2) summary
    pfam00320
    Location:453 → 487
    GATA; GATA zinc finger
    pfam16563
    Location:173 → 209
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  2. XM_026300572.1 → XP_026156357.1  transcriptional repressor p66-beta

    UniProtKB/TrEMBL
    A0A3Q3RF69
    Related
    ENSMAMP00000000441.1, ENSMAMT00000000448.2
    Conserved Domains (2) summary
    pfam00320
    Location:453 → 487
    GATA; GATA zinc finger
    pfam16563
    Location:173 → 209
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
Nucleotide Protein
Heading Accession and Version

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