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LOC113034784 striatin [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113034784, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113034784
Gene description
striatin
See related
Ensembl:ENSACLG00000024334
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
strn
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Genomic context

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Location:
chromosome: 13
Exon count:
17
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 13 NC_039314.1 (8893186..8921202)

Chromosome 13 - NC_039314.1Genomic Context describing neighboring genes Neighboring gene G patch domain containing 11 Neighboring gene HEAT repeat containing 5B Neighboring gene vitrin Neighboring gene visual pigment-like receptor peropsin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039314.1 Chromosome 13 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables armadillo repeat domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase 2A binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-containing complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
striatin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039314.1 Reference fAstCal1.2 Primary Assembly

    Range
    8893186..8921202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026189809.1 → XP_026045594.1  striatin isoform X1

    UniProtKB/TrEMBL
    A0A3P8R1V9
    Related
    ENSACLP00000035935.1, ENSACLT00000036785.1

  2. XM_026189810.1 → XP_026045595.1  striatin isoform X2

    UniProtKB/TrEMBL
    A0A3P8R4G5
    Related
    ENSACLP00000035942.1, ENSACLT00000036792.1
    Conserved Domains (3) summary
    cd00200
    Location:419 → 741
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:432 → 478
    7WD40; WD40 repeat [structural motif]
    pfam08232
    Location:42 → 166
    Striatin; Striatin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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