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irx2a iroquois homeobox 2a [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113032737, updated on 15-Mar-2024

Summary

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Gene symbol
irx2a
Gene description
iroquois homeobox 2a
See related
Ensembl:ENSACLG00000016529
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
irx2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 11 NC_039312.1 (9620890..9626871, complement)

Chromosome 11 - NC_039312.1Genomic Context describing neighboring genes Neighboring gene lysophosphatidylcholine acyltransferase 1 Neighboring gene iroquois homeobox 4a Neighboring gene uncharacterized LOC113032062 Neighboring gene iroquois homeobox 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039312.1 Chromosome 11 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iroquois-class homeodomain protein IRX-2
Names
iroquois homeobox 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039312.1 Reference fAstCal1.2 Primary Assembly

    Range
    9620890..9626871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026185808.1 → XP_026041593.1  iroquois-class homeodomain protein IRX-2

    UniProtKB/TrEMBL
    A0A3P8Q4E5, A0A3P8Q4Q3
    Related
    ENSACLP00000024286.1, ENSACLT00000024866.1
    Conserved Domains (2) summary
    smart00548
    Location:340 → 356
    IRO; Motif in Iroquois-class homeodomain proteins (only). Unknown function
    pfam05920
    Location:129 → 168
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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