U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113032349, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
nhlrc1
Gene description
NHL repeat containing E3 ubiquitin protein ligase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 11 NC_039312.1 (18230576..18232473, complement)

Chromosome 11 - NC_039312.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 24b Neighboring gene kinesin family member 13A Neighboring gene phosphatidylserine synthase 1a Neighboring gene uncharacterized LOC113032153

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_039312.1 Chromosome 11 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase NHLRC1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039312.1 Reference fAstCal1.2 Primary Assembly

    Range
    18230576..18232473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026185228.1 → XP_026041013.1  E3 ubiquitin-protein ligase NHLRC1

    Conserved Domains (2) summary
    cd14961
    Location:130 → 403
    NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
    cd16516
    Location:26 → 74
    RING-HC_malin; RING finger, HC subclass, found in malin and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.