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cnot3a CCR4-NOT transcription complex, subunit 3a [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113032108, updated on 15-Mar-2024

Summary

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Gene symbol
cnot3a
Gene description
CCR4-NOT transcription complex, subunit 3a
See related
Ensembl:ENSACLG00000021136
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
cnot3
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 11 NC_039312.1 (21480620..21492449)

Chromosome 11 - NC_039312.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113032649 Neighboring gene NADH:ubiquinone oxidoreductase subunit A3 Neighboring gene TCF3 (E2A) fusion partner Neighboring gene PRP31 pre-mRNA processing factor 31 homolog (yeast) Neighboring gene lemur tyrosine kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039312.1 Chromosome 11 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039312.1 Reference fAstCal1.2 Primary Assembly

    Range
    21480620..21492449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026184776.1 → XP_026040561.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A3P8QNF4
    Related
    ENSACLP00000031170.1, ENSACLT00000031904.1
    Conserved Domains (2) summary
    pfam04065
    Location:3 → 229
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:778 → 903
    NOT2_3_5; NOT2 / NOT3 / NOT5 family

  2. XM_026184777.1 → XP_026040562.1  CCR4-NOT transcription complex subunit 3 isoform X2

    UniProtKB/TrEMBL
    A0A3P8QQF5
    Related
    ENSACLP00000031227.1, ENSACLT00000031960.1
    Conserved Domains (2) summary
    pfam04065
    Location:3 → 229
    Not3; Not1 N-terminal domain, CCR4-Not complex component
    pfam04153
    Location:759 → 884
    NOT2_3_5; NOT2 / NOT3 / NOT5 family
Nucleotide Protein
Heading Accession and Version

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