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fam171a1 family with sequence similarity 171 member A1 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113031507, updated on 15-Mar-2024

Summary

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Gene symbol
fam171a1
Gene description
family with sequence similarity 171 member A1
See related
Ensembl:ENSACLG00000016894
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 11 NC_039312.1 (19716143..19742847)

Chromosome 11 - NC_039312.1Genomic Context describing neighboring genes Neighboring gene rano class II histocompatibility antigen, A beta chain-like Neighboring gene H-2 class II histocompatibility antigen, A-U alpha chain-like Neighboring gene N-myristoyltransferase 2 Neighboring gene uncharacterized LOC113031735 Neighboring gene ribonuclease P protein subunit p38-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039312.1 Chromosome 11 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAM171A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039312.1 Reference fAstCal1.2 Primary Assembly

    Range
    19716143..19742847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026183635.1 → XP_026039420.1  protein FAM171A1

    UniProtKB/TrEMBL
    A0A3P8Q5Y1
    Related
    ENSACLP00000024820.1, ENSACLT00000025416.1
    Conserved Domains (1) summary
    pfam10577
    Location:38 → 895
    UPF0560; Uncharacterized protein family UPF0560

RNA

  1. XR_003273746.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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