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chd2 chromodomain helicase DNA binding protein 2 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113026825, updated on 15-Mar-2024

Summary

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Gene symbol
chd2
Gene description
chromodomain helicase DNA binding protein 2
See related
Ensembl:ENSACLG00000021370
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
42
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 7 NC_039308.1 (56506641..56535961)

Chromosome 7 - NC_039308.1Genomic Context describing neighboring genes Neighboring gene solute carrier organic anion transporter family member 3A1a Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene family with sequence similarity 174 member B Neighboring gene repulsive guidance molecule BMP co-receptor a Neighboring gene uncharacterized LOC113027470

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039308.1 Chromosome 7 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039308.1 Reference fAstCal1.2 Primary Assembly

    Range
    56506641..56535961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026175997.1 → XP_026031782.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3P8QRD6
    Conserved Domains (5) summary
    cd00024
    Location:300 → 362
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:398 → 464
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1471 → 1561
    DUF4208; Domain of unknown function (DUF4208)
    cl26465
    Location:485 → 1039
    SNF2_N; SNF2 family N-terminal domain
    cl28271
    Location:1598 → 1807
    dnaA; chromosomal replication initiation protein; Provisional

  2. XM_026175998.1 → XP_026031783.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3P8QRD6
    Related
    ENSACLP00000031562.1, ENSACLT00000032305.1
    Conserved Domains (5) summary
    cd00024
    Location:261 → 323
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:359 → 425
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam13907
    Location:1432 → 1522
    DUF4208; Domain of unknown function (DUF4208)
    cl26465
    Location:446 → 1000
    SNF2_N; SNF2 family N-terminal domain
    cl28271
    Location:1559 → 1768
    dnaA; chromosomal replication initiation protein; Provisional
Nucleotide Protein
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