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kcnc1b potassium voltage-gated channel, Shaw-related subfamily, member 1b [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113026633, updated on 15-Mar-2024

Summary

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Gene symbol
kcnc1b
Gene description
potassium voltage-gated channel, Shaw-related subfamily, member 1b
See related
Ensembl:ENSACLG00000011574
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Also known as
kcnc1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 7 NC_039308.1 (53496644..53508986)

Chromosome 7 - NC_039308.1Genomic Context describing neighboring genes Neighboring gene single immunoglobulin and toll-interleukin 1 receptor (TIR) domain Neighboring gene plakophilin 3a Neighboring gene CD81 antigen-like Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039308.1 Chromosome 7 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables delayed rectifier potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated potassium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium voltage-gated channel subfamily C member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039308.1 Reference fAstCal1.2 Primary Assembly

    Range
    53496644..53508986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026175646.1 → XP_026031431.1  potassium voltage-gated channel subfamily C member 1 isoform X3

    Conserved Domains (2) summary
    cd18414
    Location:6 → 122
    BTB_KCNC1_3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily C members KCNC1 and KCNC3
    pfam00520
    Location:187 → 445
    Ion_trans; Ion transport protein

  2. XM_026175645.1 → XP_026031430.1  potassium voltage-gated channel subfamily C member 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P8PJ58
    Related
    ENSACLP00000016999.1, ENSACLT00000017412.1
    Conserved Domains (2) summary
    pfam00520
    Location:187 → 445
    Ion_trans; Ion transport protein
    pfam02214
    Location:10 → 104
    BTB_2; BTB/POZ domain

  3. XM_026175644.1 → XP_026031429.1  potassium voltage-gated channel subfamily C member 1 isoform X1

    Conserved Domains (2) summary
    cd18414
    Location:6 → 122
    BTB_KCNC1_3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily C members KCNC1 and KCNC3
    pfam00520
    Location:187 → 445
    Ion_trans; Ion transport protein
Nucleotide Protein
Heading Accession and Version

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