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ubap1 ubiquitin associated protein 1 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113022772, updated on 15-Mar-2024

Summary

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Gene symbol
ubap1
Gene description
ubiquitin associated protein 1
See related
Ensembl:ENSACLG00000012393
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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See ubap1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 5 NC_039306.1 (26879662..26886906, complement)

Chromosome 5 - NC_039306.1Genomic Context describing neighboring genes Neighboring gene ubiquitin associated protein 2a Neighboring gene DDB1 and CUL4 associated factor 12 Neighboring gene ubiquitin-conjugating enzyme E2R 2 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 2 Neighboring gene Rieske (Fe-S) domain containing

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039306.1 Chromosome 5 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039306.1 Reference fAstCal1.2 Primary Assembly

    Range
    26879662..26886906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026168549.1 → XP_026024334.1  ubiquitin-associated protein 1

    UniProtKB/TrEMBL
    A0A3P8PMB4, A0A3P8PMC2
    Related
    ENSACLP00000018158.1, ENSACLT00000018589.1
    Conserved Domains (3) summary
    cd14315
    Location:355 → 397
    UBA1_UBAP1; UBA1 domain found in vertebrate ubiquitin-associated protein 1 (UBAP-1)
    cd14316
    Location:427 → 463
    UBA2_UBAP1_like; UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins
    cl28408
    Location:276 → 395
    UBQ; Ubiquitin homologues
Nucleotide Protein
Heading Accession and Version

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