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col7a1 collagen, type VII, alpha 1 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113022518, updated on 15-Mar-2024

Summary

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Gene symbol
col7a1
Gene description
collagen, type VII, alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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See col7a1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
122
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 5 NC_039306.1 (21016067..21079924)

Chromosome 5 - NC_039306.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide-binding protein G(i) subunit alpha-2-like Neighboring gene PAK4-inhibitor inka2-like Neighboring gene probable G-protein coupled receptor 22 Neighboring gene transfer RNA phenylalanine (anticodon GAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039306.1 Chromosome 5 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(VII) chain
Names
collagen type VII alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039306.1 Reference fAstCal1.2 Primary Assembly

    Range
    21016067..21079924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026167995.1 → XP_026023780.1  collagen alpha-1(VII) chain isoform X5

  2. XM_026167994.1 → XP_026023779.1  collagen alpha-1(VII) chain isoform X4

  3. XM_026167993.1 → XP_026023778.1  collagen alpha-1(VII) chain isoform X3

  4. XM_026167991.1 → XP_026023776.1  collagen alpha-1(VII) chain isoform X1

  5. XM_026167992.1 → XP_026023777.1  collagen alpha-1(VII) chain isoform X2

RNA

  1. XR_003272434.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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