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sfpq splicing factor proline/glutamine-rich [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113014097, updated on 15-Mar-2024

Summary

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Gene symbol
sfpq
Gene description
splicing factor proline/glutamine-rich
See related
Ensembl:ENSACLG00000022332
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 22 NC_039322.1 (6909914..6928551, complement)

Chromosome 22 - NC_039322.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113014180 Neighboring gene zinc finger MYM-type containing 4, tandem duplicate 1 Neighboring gene lysophospholipase 2 Neighboring gene PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039322.1 Chromosome 22 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor, proline- and glutamine-rich
Names
splicing factor proline and glutamine rich

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039322.1 Reference fAstCal1.2 Primary Assembly

    Range
    6909914..6928551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026155400.1 → XP_026011185.1  splicing factor, proline- and glutamine-rich isoform X2

    UniProtKB/TrEMBL
    A0A3P8QV19

  2. XM_026155399.1 → XP_026011184.1  splicing factor, proline- and glutamine-rich isoform X1

    UniProtKB/TrEMBL
    A0A3P8QTG8, A0A3P8QV19
    Related
    ENSACLP00000032965.1, ENSACLT00000033744.1

RNA

  1. XR_003270926.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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