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col4a2 collagen, type IV, alpha 2 [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113008418, updated on 15-Mar-2024

Summary

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Gene symbol
col4a2
Gene description
collagen, type IV, alpha 2
See related
Ensembl:ENSACLG00000003889
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
47
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 16 NC_039317.1 (15602216..15662399, complement)

Chromosome 16 - NC_039317.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent (S)-NAD(P)H-hydrate dehydratase-like Neighboring gene RAB20, member RAS oncogene family Neighboring gene collagen, type IV, alpha 1 Neighboring gene insulin receptor substrate 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039317.1 Chromosome 16 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen type IX trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(IV) chain
Names
collagen type IV alpha 2 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039317.1 Reference fAstCal1.2 Primary Assembly

    Range
    15602216..15662399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026145795.1 → XP_026001580.1  collagen alpha-2(IV) chain isoform X2

    Related
    ENSACLP00000005836.1, ENSACLT00000005963.1

  2. XM_026145794.1 → XP_026001579.1  collagen alpha-2(IV) chain isoform X1

    Related
    ENSACLP00000005764.1, ENSACLT00000005885.1
Nucleotide Protein
Heading Accession and Version

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