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PRDM15 PR/SET domain 15 [ Dromaius novaehollandiae (emu) ]

Gene ID: 112996155, updated on 6-Jun-2024

Summary

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Gene symbol
PRDM15
Gene description
PR/SET domain 15
See related
Ensembl:ENSDNVG00000008679
Gene type
protein coding
RefSeq status
MODEL
Organism
Dromaius novaehollandiae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 1 NC_088098.1 (121391543..121429411, complement)
100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020453926.1 (184089..223374)

Chromosome 1 - NC_088098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135330716 Neighboring gene uncharacterized LOC112996146 Neighboring gene C2 calcium dependent domain containing 2 Neighboring gene zinc finger and BTB domain containing 21 Neighboring gene uncharacterized LOC135330724

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDroNov1.hap1

Genomic

  1. NC_088098.1 Reference bDroNov1.hap1

    Range
    121391543..121429411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064525328.1 → XP_064381398.1  PR domain zinc finger protein 15 isoform X1

    UniProtKB/TrEMBL
    A0A7K9B4V5, A0A8C4JP24

  2. XM_064525345.1 → XP_064381415.1  PR domain zinc finger protein 15 isoform X1

    UniProtKB/TrEMBL
    A0A7K9B4V5, A0A8C4JP24

  3. XM_064525366.1 → XP_064381436.1  PR domain zinc finger protein 15 isoform X3

    UniProtKB/TrEMBL
    A0A7K9B4V5

  4. XM_026121500.2 → XP_025977285.1  PR domain zinc finger protein 15 isoform X1

    UniProtKB/TrEMBL
    A0A7K9B4V5, A0A8C4JP24
    Conserved Domains (5) summary
    smart00317
    Location:50 → 165
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:404 → 866
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:733 → 753
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:669 → 689
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06614
    Location:210 → 355
    Neuromodulin

  5. XM_026121499.2 → XP_025977284.1  PR domain zinc finger protein 15 isoform X1

    UniProtKB/TrEMBL
    A0A7K9B4V5, A0A8C4JP24
    Conserved Domains (5) summary
    smart00317
    Location:50 → 165
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:404 → 866
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:733 → 753
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:669 → 689
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06614
    Location:210 → 355
    Neuromodulin

  6. XM_064525386.1 → XP_064381456.1  PR domain zinc finger protein 15 isoform X5

    UniProtKB/TrEMBL
    A0A7K9B4V5

  7. XM_064525376.1 → XP_064381446.1  PR domain zinc finger protein 15 isoform X4

    UniProtKB/TrEMBL
    A0A7K9B4V5

  8. XM_064525358.1 → XP_064381428.1  PR domain zinc finger protein 15 isoform X2

    UniProtKB/TrEMBL
    A0A7K9B4V5

  9. XM_026121498.2 → XP_025977283.1  PR domain zinc finger protein 15 isoform X1

    UniProtKB/TrEMBL
    A0A7K9B4V5, A0A8C4JP24
    Conserved Domains (5) summary
    smart00317
    Location:50 → 165
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:404 → 866
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:733 → 753
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:669 → 689
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06614
    Location:210 → 355
    Neuromodulin

  10. XM_026121497.2 → XP_025977282.1  PR domain zinc finger protein 15 isoform X1

    UniProtKB/TrEMBL
    A0A7K9B4V5, A0A8C4JP24
    Related
    ENSDNVP00000012300.1
    Conserved Domains (5) summary
    smart00317
    Location:50 → 165
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:404 → 866
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:733 → 753
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:669 → 689
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam06614
    Location:210 → 355
    Neuromodulin
Nucleotide Protein
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