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PCDH17 protocadherin 17 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112964588, updated on 15-Mar-2024

Summary

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Gene symbol
PCDH17
Gene description
protocadherin 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020448252.1 (406839..491905, complement)

NW_020448252.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020448252 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020448252.1 Reference aptRow1

    Range
    406839..491905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026062867.1 → XP_025918652.1  protocadherin-17 isoform X2

    Conserved Domains (2) summary
    cd11304
    Location:477 → 578
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:21 → 121
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_026062868.1 → XP_025918653.1  protocadherin-17 isoform X3

    Conserved Domains (2) summary
    cd11304
    Location:477 → 578
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:21 → 121
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  3. XM_026062866.1 → XP_025918651.1  protocadherin-17 isoform X1

    Conserved Domains (2) summary
    cd11304
    Location:477 → 578
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:21 → 121
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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