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SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112963173, updated on 15-Mar-2024

Summary

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Gene symbol
SMARCA2
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
See related
Ensembl:ENSARWG00000002314
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447897.1 (970715..1094801)

NW_020447897.1Genomic Context describing neighboring genes Neighboring gene doublesex and mab-3 related transcription factor 2 Neighboring gene uncharacterized LOC112963175 Neighboring gene very low density lipoprotein receptor Neighboring gene potassium voltage-gated channel modifier subfamily V member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020447897 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable global transcription activator SNF2L2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020447897.1 Reference aptRow1

    Range
    970715..1094801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026059983.1 → XP_025915768.1  probable global transcription activator SNF2L2 isoform X7

    Conserved Domains (7) summary
    smart00592
    Location:587 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:718 → 1200
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:317 → 524
    Peptidase_M23; Peptidase family M23

  2. XM_026059981.1 → XP_025915766.1  probable global transcription activator SNF2L2 isoform X6

    Conserved Domains (8) summary
    smart00592
    Location:587 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl25548
    Location:386 → 548
    DUF4670; Domain of unknown function (DUF4670)
    cl26465
    Location:718 → 1200
    SNF2_N; SNF2 family N-terminal domain
    cl27975
    Location:100 → 379
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  3. XM_026059984.1 → XP_025915769.1  probable global transcription activator SNF2L2 isoform X8

    Conserved Domains (7) summary
    smart00592
    Location:587 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:718 → 1200
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:317 → 524
    Peptidase_M23; Peptidase family M23

  4. XM_026059980.1 → XP_025915765.1  probable global transcription activator SNF2L2 isoform X5

    Conserved Domains (8) summary
    smart00592
    Location:587 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam11235
    Location:138 → 283
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:718 → 1200
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:317 → 524
    Peptidase_M23; Peptidase family M23

  5. XM_026059974.1 → XP_025915759.1  probable global transcription activator SNF2L2 isoform X1

    Conserved Domains (9) summary
    cd05516
    Location:1380 → 1486
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:587 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam11235
    Location:138 → 283
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:718 → 1200
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:317 → 524
    Peptidase_M23; Peptidase family M23

  6. XM_026059977.1 → XP_025915762.1  probable global transcription activator SNF2L2 isoform X2

    Related
    ENSARWP00000003070.1, ENSARWT00000003590.1
    Conserved Domains (8) summary
    cd05516
    Location:1378 → 1484
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:585 → 629
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:431 → 503
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam14619
    Location:1255 → 1322
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:716 → 1198
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:315 → 522
    Peptidase_M23; Peptidase family M23

  7. XM_026059978.1 → XP_025915763.1  probable global transcription activator SNF2L2 isoform X3

    Related
    ENSARWP00000003076.1, ENSARWT00000003596.1
    Conserved Domains (8) summary
    cd05516
    Location:1344 → 1450
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:551 → 595
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:397 → 469
    HSA; domain in helicases and associated with SANT domains
    pfam08880
    Location:171 → 205
    QLQ
    pfam09606
    Location:61 → 246
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam14619
    Location:1221 → 1288
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:682 → 1164
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:281 → 488
    Peptidase_M23; Peptidase family M23

  8. XM_026059976.1 → XP_025915761.1  probable global transcription activator SNF2L2 isoform X1

    Conserved Domains (9) summary
    cd05516
    Location:1380 → 1486
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:587 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam11235
    Location:138 → 283
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:718 → 1200
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:317 → 524
    Peptidase_M23; Peptidase family M23

  9. XM_026059975.1 → XP_025915760.1  probable global transcription activator SNF2L2 isoform X1

    Related
    ENSARWP00000003079.1, ENSARWT00000003599.1
    Conserved Domains (9) summary
    cd05516
    Location:1380 → 1486
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:587 → 631
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:433 → 505
    HSA; domain in helicases and associated with SANT domains
    pfam15240
    Location:95 → 179
    Pro-rich; Proline-rich
    pfam08880
    Location:171 → 205
    QLQ
    pfam11235
    Location:138 → 283
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam14619
    Location:1257 → 1324
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:718 → 1200
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:317 → 524
    Peptidase_M23; Peptidase family M23

  10. XM_026059979.1 → XP_025915764.1  probable global transcription activator SNF2L2 isoform X4

    Conserved Domains (8) summary
    cd05516
    Location:1296 → 1402
    Bromo_SNF2L2; Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone ...
    smart00592
    Location:503 → 547
    BRK; domain in transcription and CHROMO domain helicases
    smart00573
    Location:349 → 421
    HSA; domain in helicases and associated with SANT domains
    pfam08880
    Location:87 → 121
    QLQ
    pfam14619
    Location:1173 → 1240
    SnAC; Snf2-ATP coupling, chromatin remodelling complex
    cl26465
    Location:634 → 1116
    SNF2_N; SNF2 family N-terminal domain
    cl27539
    Location:233 → 440
    Peptidase_M23; Peptidase family M23
    cl27975
    Location:13 → 191
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
Nucleotide Protein
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