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TOM1L2 target of myb1 like 2 membrane trafficking protein [ Vulpes vulpes (red fox) ]

Gene ID: 112924962, updated on 15-Mar-2024

Summary

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Gene symbol
TOM1L2
Gene description
target of myb1 like 2 membrane trafficking protein
See related
Ensembl:ENSVVUG00000030127
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes vulpes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current VulVul2.2 (GCF_003160815.1) Unplaced Scaffold NW_020356487.1 (11297421..11416224)

NW_020356487.1Genomic Context describing neighboring genes Neighboring gene GID complex subunit 4 homolog Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2 Neighboring gene dynein regulatory complex subunit 3 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene retinoic acid induced 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020356487 Unplaced Scaffold Reference VulVul2.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes vulpes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VulVul2.2 Primary Assembly

Genomic

  1. NW_020356487.1 Reference VulVul2.2 Primary Assembly

    Range
    11297421..11416224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026005627.1 → XP_025861412.1  TOM1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7TJB7
    Related
    ENSVVUP00000042434.1, ENSVVUT00000055474.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:219 → 310
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  2. XM_026005628.1 → XP_025861413.1  TOM1-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7SWQ9
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:219 → 310
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  3. XM_026005629.1 → XP_025861414.1  TOM1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q7SJ03
    Related
    ENSVVUP00000042435.1, ENSVVUT00000055475.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:219 → 310
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  4. XM_026005630.1 → XP_025861415.1  TOM1-like protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q7U185
    Related
    ENSVVUP00000042436.1, ENSVVUT00000055476.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:219 → 310
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  5. XM_026005631.1 → XP_025861416.1  TOM1-like protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A3Q7SZH0
    Conserved Domains (2) summary
    cd16996
    Location:12 → 148
    VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2
    cd14238
    Location:165 → 256
    GAT_TM1L2; canonical GAT domain found in target of Myb-like protein 2 (Tom1L2)

RNA

  1. XR_003235997.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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