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CUX1 cut like homeobox 1 [ Puma concolor (puma) ]

Gene ID: 112859905, updated on 15-Mar-2024

Summary

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Gene symbol
CUX1
Gene description
cut like homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339332.1 (7732317..8074579, complement)

NW_020339332.1Genomic Context describing neighboring genes Neighboring gene PRKR interacting protein 1 Neighboring gene uncharacterized LOC112860135 Neighboring gene U6 spliceosomal RNA Neighboring gene myosin light chain 10 Neighboring gene collagen type XXVI alpha 1 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339332 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CASP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339332.1 Reference PumCon1.0 Primary Assembly

    Range
    7732317..8074579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025923097.1 → XP_025778882.1  protein CASP

    UniProtKB/TrEMBL
    A0A6P6HSS4
    Conserved Domains (5) summary
    pfam00046
    Location:1302 → 1355
    Homeobox; Homeobox domain
    pfam02376
    Location:1177 → 1254
    CUT; CUT domain
    pfam08172
    Location:1507 → 1644
    CASP_C; CASP C terminal
    cl25732
    Location:10 → 340
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26464
    Location:827 → 988
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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