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SF3B3 splicing factor 3b subunit 3 [ Puma concolor (puma) ]

Gene ID: 112857334, updated on 15-Mar-2024

Summary

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Gene symbol
SF3B3
Gene description
splicing factor 3b subunit 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339221.1 (13059858..13116847)

NW_020339221.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene fucose kinase Neighboring gene component of oligomeric golgi complex 4 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene uncharacterized LOC112857407 Neighboring gene dnaJ homolog subfamily C member 7 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339221 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339221.1 Reference PumCon1.0 Primary Assembly

    Range
    13059858..13116847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025920624.1 → XP_025776409.1  splicing factor 3B subunit 3

    UniProtKB/TrEMBL
    A0A6P6HKU0
    Conserved Domains (2) summary
    pfam03178
    Location:863 → 1182
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76 → 592
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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