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SMNDC1 survival motor neuron domain containing 1 [ Puma concolor (puma) ]

Gene ID: 112854507, updated on 15-Mar-2024

Summary

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Gene symbol
SMNDC1
Gene description
survival motor neuron domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339214.1 (20349250..20359894)

NW_020339214.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112854801 Neighboring gene protein FAM136A pseudogene Neighboring gene MAX interactor 1, dimerization protein Neighboring gene adducin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339214 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
survival of motor neuron-related-splicing factor 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339214.1 Reference PumCon1.0 Primary Assembly

    Range
    20349250..20359894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025917998.1 → XP_025773783.1  survival of motor neuron-related-splicing factor 30

    UniProtKB/TrEMBL
    A0A6P6HE44
    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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