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PDZD7 PDZ domain containing 7 [ Puma concolor (puma) ]

Gene ID: 112854313, updated on 15-Mar-2024

Summary

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Gene symbol
PDZD7
Gene description
PDZ domain containing 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Puma concolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current PumCon1.0 (GCF_003327715.1) Unplaced Scaffold NW_020339214.1 (28472290..28487631)

NW_020339214.1Genomic Context describing neighboring genes Neighboring gene Kazal type serine peptidase inhibitor domain 1 Neighboring gene sideroflexin 3 Neighboring gene leucine zipper tumor suppressor 2 Neighboring gene twinkle mtDNA helicase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020339214 Unplaced Scaffold Reference PumCon1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of stereocilia ankle link complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: PDZ domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puma concolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PumCon1.0 Primary Assembly

Genomic

  1. NW_020339214.1 Reference PumCon1.0 Primary Assembly

    Range
    28472290..28487631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025917784.1 → XP_025773569.1  LOW QUALITY PROTEIN: PDZ domain-containing protein 7

    UniProtKB/TrEMBL
    A0A6P6HCT1
    Conserved Domains (3) summary
    cd00992
    Location:84 → 164
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07358
    Location:333 → 410
    HN_PDZD7_like; harmonin_N_like domain, a protein-binding module of PDZ domain-containing protein 7 and related proteins
    cl26464
    Location:749 → 877
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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