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ASTN1 astrotactin 1 [ Callorhinus ursinus (northern fur seal) ]

Gene ID: 112828701, updated on 15-Mar-2024

Summary

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Gene symbol
ASTN1
Gene description
astrotactin 1
See related
EnsemblRapid:ENSCURG00000006592
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinus ursinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020312885.1 (19949813..20254428, complement)

NW_020312885.1Genomic Context describing neighboring genes Neighboring gene pappalysin 2 Neighboring gene U6 spliceosomal RNA Neighboring gene U2 spliceosomal RNA Neighboring gene BMP/retinoic acid inducible neural specific 2 Neighboring gene V-type proton ATPase subunit E 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020312885 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
astrotactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM326570v1 Primary Assembly

Genomic

  1. NW_020312885.1 Reference ASM326570v1 Primary Assembly

    Range
    19949813..20254428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025877937.1 → XP_025733722.1  astrotactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q7PUQ6
    Related
    ENSCURP00000010429.1, ENSCURT00000012227.1
    Conserved Domains (2) summary
    smart00457
    Location:804 → 991
    MACPF; membrane-attack complex / perforin
    pfam14670
    Location:652 → 699
    FXa_inhibition; Coagulation Factor Xa inhibitory site

  2. XM_025877936.1 → XP_025733721.1  astrotactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7R0D0
    Conserved Domains (2) summary
    smart00457
    Location:812 → 999
    MACPF; membrane-attack complex / perforin
    pfam14670
    Location:660 → 707
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

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