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TRIM10 tripartite motif containing 10 [ Callorhinus ursinus (northern fur seal) ]

Gene ID: 112813517, updated on 15-Mar-2024

Summary

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Gene symbol
TRIM10
Gene description
tripartite motif containing 10
See related
EnsemblRapid:ENSCURG00000023923
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinus ursinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Callorhinus
Orthologs
human mouse all
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Genomic context

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See TRIM10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM326570v1 (GCF_003265705.1) Unplaced Scaffold NW_020313108.1 (1282682..1290043)

NW_020313108.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 26-like Neighboring gene tripartite motif-containing protein 26 Neighboring gene tripartite motif containing 15 Neighboring gene tripartite motif containing 40 Neighboring gene ring finger protein 39 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 11 Neighboring gene RNA polymerase I subunit H

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020313108 Unplaced Scaffold Reference ASM326570v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinus ursinus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM326570v1 Primary Assembly

Genomic

  1. NW_020313108.1 Reference ASM326570v1 Primary Assembly

    Range
    1282682..1290043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025858571.1 → XP_025714356.1  tripartite motif-containing protein 10

    UniProtKB/TrEMBL
    A0A3Q7N6I8
    Conserved Domains (4) summary
    smart00336
    Location:94 → 135
    BBOX; B-Box-type zinc finger
    cd15827
    Location:309 → 480
    SPRY_PRY_TRIM10; PRY/SPRY domain of tripartite motif-binding protein 10 (TRIM10) also known as hematopoietic RING finger 1 (HERF1)
    cd16593
    Location:13 → 61
    RING-HC_TRIM10_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 10 (TRIM10) and similar proteins
    cl25407
    Location:143 → 241
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  2. XM_025858572.1 → XP_025714357.1  tripartite motif-containing protein 10

    UniProtKB/TrEMBL
    A0A3Q7N6I8
    Related
    ENSCURP00000038872.1, ENSCURT00000044318.1
    Conserved Domains (4) summary
    smart00336
    Location:94 → 135
    BBOX; B-Box-type zinc finger
    cd15827
    Location:309 → 480
    SPRY_PRY_TRIM10; PRY/SPRY domain of tripartite motif-binding protein 10 (TRIM10) also known as hematopoietic RING finger 1 (HERF1)
    cd16593
    Location:13 → 61
    RING-HC_TRIM10_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 10 (TRIM10) and similar proteins
    cl25407
    Location:143 → 241
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein
Heading Accession and Version

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