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PDS5B PDS5 cohesin associated factor B [ Canis lupus dingo (dingo) ]

Gene ID: 112669428, updated on 6-Jun-2024

Summary

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Gene symbol
PDS5B
Gene description
PDS5 cohesin associated factor B
See related
Ensembl:ENSCAFG00020021916
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PDS5B in Genome Data Viewer
Location:
chromosome: 25
Exon count:
40
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 25 NC_064267.1 (7380233..7560254, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 25 NC_049957.1 (7430598..7610366, complement)

Chromosome 25 - NC_064267.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112669431 Neighboring gene uncharacterized LOC118349966 Neighboring gene small nucleolar RNA ACA64 Neighboring gene vimentin-like Neighboring gene uncharacterized LOC112669437 Neighboring gene NEDD4 binding protein 2 like 2 Neighboring gene aurora kinase C-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064267.1 Reference ASM325472v2

    Range
    7380233..7560254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025462529.3 → XP_025318314.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LG57, A0A8C0PQ17
    Related
    ENSCAFP00020031734.1
    Conserved Domains (3) summary
    PTZ00108
    Location:1212 → 1422
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cd19953
    Location:31 → 661
    PDS5; Sister chromatid cohesion protein PDS5

  2. XM_049101148.1 → XP_048957105.1  sister chromatid cohesion protein PDS5 homolog B isoform X7

    UniProtKB/TrEMBL
    A0A8C0PQ17

  3. XM_035718415.2 → XP_035574308.2  sister chromatid cohesion protein PDS5 homolog B isoform X4

    UniProtKB/TrEMBL
    A0A8C0PQ17

  4. XM_035718414.2 → XP_035574307.2  sister chromatid cohesion protein PDS5 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A8C0PQ17

  5. XM_035718416.2 → XP_035574309.2  sister chromatid cohesion protein PDS5 homolog B isoform X6

    UniProtKB/TrEMBL
    A0A8C0PQ17

  6. XM_035718413.2 → XP_035574306.2  sister chromatid cohesion protein PDS5 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A8C0PQ17, A0A8I3NSP1, A0A8P0NZU6

  7. XM_049101147.1 → XP_048957104.1  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A8C0PQ17

  8. XM_035718412.2 → XP_035574305.1  sister chromatid cohesion protein PDS5 homolog B isoform X5

    UniProtKB/TrEMBL
    A0A8C0LG57, A0A8C0PQ17
    Conserved Domains (3) summary
    PTZ00108
    Location:1212 → 1422
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]
    cd19953
    Location:31 → 661
    PDS5; Sister chromatid cohesion protein PDS5

  9. XM_049101149.1 → XP_048957106.1  sister chromatid cohesion protein PDS5 homolog B isoform X8

RNA

  1. XR_004817026.2 RNA Sequence

  2. XR_004817023.2 RNA Sequence

  3. XR_007405849.1 RNA Sequence

Nucleotide Protein
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