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PHTF1 putative homeodomain transcription factor 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112664179, updated on 15-Mar-2024

Summary

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Gene symbol
PHTF1
Gene description
putative homeodomain transcription factor 1
See related
Ensembl:ENSCAFG00020001471
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 17 NC_064259.1 (51633771..51677670, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 17 Unlocalized Scaffold NW_023365179.1 (51906833..51950683, complement)

Chromosome 17 - NC_064259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112664186 Neighboring gene uncharacterized LOC112664185 Neighboring gene uncharacterized LOC118351159 Neighboring gene collagen alpha-1(III) chain-like Neighboring gene round spermatid basic protein 1 Neighboring gene uncharacterized LOC125752774 Neighboring gene uncharacterized LOC112664184 Neighboring gene protein tyrosine phosphatase non-receptor type 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHTF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064259.1 Reference ASM325472v2

    Range
    51633771..51677670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025453477.3 → XP_025309262.1  protein PHTF1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0JIX7, A0A8C0QPN5, A0A8I3S5J7
    Conserved Domains (1) summary
    pfam12129
    Location:5 → 151
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

  2. XM_025453478.3 → XP_025309263.1  protein PHTF1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JIX7
    Conserved Domains (1) summary
    pfam12129
    Location:5 → 151
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

  3. XM_025453473.3 → XP_025309258.1  protein PHTF1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JIX7, A0A8C0JMD5, A0A8C0QH90, A0A8I3PAC6
    Related
    ENSCAFP00020001659.1
    Conserved Domains (1) summary
    pfam12129
    Location:5 → 151
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

  4. XM_025453475.3 → XP_025309260.1  protein PHTF1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JIX7, A0A8C0QB33, A0A8I3PG78
    Conserved Domains (1) summary
    pfam12129
    Location:1 → 109
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

  5. XM_025453476.3 → XP_025309261.1  protein PHTF1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JIX7, A0A8C0QB33, A0A8I3PG78
    Conserved Domains (1) summary
    pfam12129
    Location:1 → 109
    Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor
Nucleotide Protein
Heading Accession and Version

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