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LRFN1 leucine rich repeat and fibronectin type III domain containing 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112645489, updated on 6-Jun-2024

Summary

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Gene symbol
LRFN1
Gene description
leucine rich repeat and fibronectin type III domain containing 1
See related
Ensembl:ENSCAFG00020016174
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 1 NC_064243.1 (114011304..114023214)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 1 Unlocalized Scaffold NW_023365038.1 (114807001..114818838)

Chromosome 1 - NC_064243.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 4B Neighboring gene PAF1 homolog, Paf1/RNA polymerase II complex component Neighboring gene glia maturation factor gamma Neighboring gene interferon lambda-1-like Neighboring gene interferon lambda-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and fibronectin type III domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064243.1 Reference ASM325472v2

    Range
    114011304..114023214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025425053.3 → XP_025280838.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0KV00, A0A8C0LQ96, A0A8C0SMN7, A0A8I3RS83
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:426 → 500
    fn3; Fibronectin type III domain
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  2. XM_025425055.3 → XP_025280840.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0KV00, A0A8C0LQ96, A0A8C0SMN7, A0A8I3RS83
    Related
    ENSCAFP00020020411.1
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:426 → 500
    fn3; Fibronectin type III domain
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  3. XM_049109688.1 → XP_048965645.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0KV00, A0A8C0LQ96, A0A8C0SMN7, A0A8I3RS83

  4. XM_035703140.2 → XP_035559033.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0KV00, A0A8C0LQ96, A0A8C0SMN7, A0A8I3RS83
    Conserved Domains (6) summary
    smart00082
    Location:252 → 284
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:426 → 500
    fn3; Fibronectin type III domain
    cd00096
    Location:299 → 302
    Ig; Ig strand A [structural motif]
    cd21340
    Location:70 → 226
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl11960
    Location:299 → 387
    Ig; Immunoglobulin domain

  5. XM_049109689.1 → XP_048965646.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0KV00, A0A8C0LQ96, A0A8C0SMN7, A0A8I3RS83

  6. XM_049109685.1 → XP_048965642.1  leucine-rich repeat and fibronectin type III domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C0KV00, A0A8C0LQ96, A0A8C0SMN7, A0A8I3RS83
Nucleotide Protein
Heading Accession and Version

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